STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
FSU_1479Conserved hypothetical protein; Identified by similarity to GB:AAO79205.1; match to protein family HMM PF08885. (375 aa)    
Predicted Functional Partners:
FSU_0937
Putative DNA topoisomerase IV, A subunit; Identified by match to protein family HMM PF00521.
  
     0.746
FSU_1944
Putative periplasmic binding protein; Identified by match to protein family HMM PF01497.
  
     0.693
FSU_0971
Putative DNA topoisomerase IV, B subunit; Identified by match to protein family HMM PF00204; match to protein family HMM PF02518.
  
     0.648
FSU_2883
Conserved hypothetical protein; Identified by similarity to PIR:G81669.
  
     0.557
FSU_1476
Putative lipoprotein; Identified by match to protein family HMM TIGR02145.
       0.545
FSU_1478
Hypothetical protein; Identified by glimmer; putative.
       0.545
FSU_0669
Peptidase, M23/M37 family; Identified by match to protein family HMM PF01551.
  
    0.522
FSU_0828
Conserved domain protein; Identified by match to protein family HMM PF03993.
  
    0.515
FSU_2056
Outer membrane efflux protein; Identified by match to protein family HMM PF02321.
  
     0.513
Your Current Organism:
Fibrobacter succinogenes
NCBI taxonomy Id: 59374
Other names: F. succinogenes subsp. succinogenes S85, Fibrobacter succinogenes S85, Fibrobacter succinogenes subsp. succinogenes S85
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.