Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-expression
Experiments
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[Homology]
Score
FSU_1493Glycosyl hydrolase, family 16; Identified by match to protein family HMM PF00722. (348 aa)    
Predicted Functional Partners:
FSU_2265
Putative xylanase; Identified by similarity to GB:AAL16415.1; match to protein family HMM PF03422.
 
   
 0.708
FSU_0196
Putative mannanase; Identified by similarity to SP:P51529; match to protein family HMM PF00150; match to protein family HMM PF02018; Belongs to the glycosyl hydrolase 5 (cellulase A) family.
 
     0.705
FSU_0577
Putative pectate lyase; Identified by match to protein family HMM PF00544.
  
     0.695
FSU_2361
Cellulase; Identified by similarity to GB:AAC41523.1; match to protein family HMM PF00759; match to protein family HMM PF02927.
  
  
  0.689
FSU_2362
Cellulase; Identified by similarity to GB:AAC44386.1; match to protein family HMM PF00759; match to protein family HMM PF02927.
  
  
  0.684
FSU_0451
Cellulase; Identified by similarity to GB:AAA68129.1; match to protein family HMM PF00759.
  
  
  0.679
FSU_0810
Glycosyl hydrolase, family 9; Identified by similarity to SP:P04954; match to protein family HMM PF00041; match to protein family HMM PF00759.
  
     0.677
FSU_1165
Beta-1,4-mannanase, man26B; Identified by match to protein family HMM PF02156; Belongs to the glycosyl hydrolase 26 family.
 
   
 0.672
FSU_1228
Putative cellulase; Identified by match to protein family HMM PF00150.
  
  
  0.672
FSU_2013
Cellulase; Identified by similarity to GB:AAC41523.1; match to protein family HMM PF00759; match to protein family HMM PF02927.
  
  
  0.664
Your Current Organism:
Fibrobacter succinogenes
NCBI taxonomy Id: 59374
Other names: F. succinogenes subsp. succinogenes S85, Fibrobacter succinogenes S85, Fibrobacter succinogenes subsp. succinogenes S85
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