STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pilCPilus assembly protein PilC; Identified by similarity to PIR:B35384; match to protein family HMM PF00482. (400 aa)    
Predicted Functional Partners:
FSU_3107
Putative general secretion pathway protein E; Identified by similarity to SP:P37093; match to protein family HMM PF00437; match to protein family HMM PF05157.
 
 0.975
FSU_0703
Type II secretion system protein; Identified by match to protein family HMM PF00437.
 
 0.974
pilT
Twitching motility protein PilT; Identified by similarity to SP:P24559; match to protein family HMM PF00437; match to protein family HMM TIGR01420.
 
  
 0.952
pilD
Type 4 prepilin-like protein leader peptide processing enzyme; Identified by similarity to SP:P31712; match to protein family HMM PF01478; match to protein family HMM PF06750.
 
  
 0.951
FSU_3316
Putative twitching motility protein PilT; Identified by similarity to GB:AAB30824.1; match to protein family HMM PF00437; match to protein family HMM TIGR01420.
 
  
 0.801
FSU_1463
Twitching motility protein-like protein.
 
  
 0.796
FSU_0658
Bacterial type II and III secretion system protein; Identified by similarity to SP:P31780; match to protein family HMM PF00263; match to protein family HMM PF03958; match to protein family HMM PF07660.
 
 
 
 0.780
FSU_2567
Putative type IV pilin; Identified by match to protein family HMM PF07963; match to protein family HMM TIGR02532.
 
  
 0.778
FSU_2593
Prepilin-type N-terminal cleavage/methylation domain protein; Identified by match to protein family HMM PF07963; match to protein family HMM TIGR02532.
 
  
 0.747
ssb
Single-strand binding protein; Identified by similarity to SP:P02339; match to protein family HMM PF00436; match to protein family HMM TIGR00621.
  
    0.733
Your Current Organism:
Fibrobacter succinogenes
NCBI taxonomy Id: 59374
Other names: F. succinogenes subsp. succinogenes S85, Fibrobacter succinogenes S85, Fibrobacter succinogenes subsp. succinogenes S85
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.