STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
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Textmining
[Homology]
Score
FSU_1510Cysteine desulfurase SufS; Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine. (407 aa)    
Predicted Functional Partners:
sufC
FeS assembly ATPase SufC; Identified by match to protein family HMM PF00005; match to protein family HMM TIGR01978.
  
 0.961
FSU_0949
FeS assembly protein SufD; Identified by similarity to SP:P77689; match to protein family HMM PF01458.
 
 0.956
sufB
FeS assembly protein SufB; Identified by match to protein family HMM PF01458; match to protein family HMM TIGR01980.
 
 0.943
FSU_0575
Cysteine desulfurase SufS; Identified by match to protein family HMM PF00266; match to protein family HMM PF01212; match to protein family HMM TIGR01979; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family.
  
  
 
0.906
trxB
Thioredoxin-disulfide reductase; Identified by similarity to SP:P50971; match to protein family HMM PF01134; match to protein family HMM PF07992.
  
 
 0.904
FSU_1511
Identified by match to protein family HMM PF00899.
   
   0.735
FSU_0861
Aminotransferase, class V; Identified by match to protein family HMM PF00266.
 
  
0.594
FSU_0744
Cysteine desulfurase auxiliary chain SufE; Identified by match to protein family HMM PF02657.
 
 
 0.557
FSU_1507
tRNA synthetase, class II (D, K and N); Identified by match to protein family HMM PF00152.
       0.524
FSU_1508
Conserved domain protein; Identified by similarity to GB:AAM71308.1; match to protein family HMM PF09603; match to protein family HMM TIGR02145.
       0.506
Your Current Organism:
Fibrobacter succinogenes
NCBI taxonomy Id: 59374
Other names: F. succinogenes subsp. succinogenes S85, Fibrobacter succinogenes S85, Fibrobacter succinogenes subsp. succinogenes S85
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