Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
FSU_1523Identified by match to protein family HMM PF05012. (176 aa)    
Predicted Functional Partners:
FSU_0355
Conserved domain protein; Identified by similarity to GB:AAM39783.1.
     0.965
FSU_1814
Conserved domain protein; Identified by similarity to GB:AAO90472.1.
     0.965
FSU_1756
Conserved hypothetical protein; Identified by similarity to GB:AAM31899.1.
      0.903
FSU_2628
Conserved hypothetical protein; Identified by similarity to GB:AAO78146.1.
      0.903
ligA
DNA ligase (NAD+); DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double- stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA; Belongs to the NAD-dependent DNA ligase family. LigA subfamily.
 
      0.730
FSU_1524
Identified by match to protein family HMM PF00614.
       0.578
FSU_1522
Conserved hypothetical protein; Identified by similarity to PIR:H90304.
       0.499
FSU_1525
Conserved hypothetical protein; Identified by similarity to GB:AAN50106.1.
       0.429
Your Current Organism:
Fibrobacter succinogenes
NCBI taxonomy Id: 59374
Other names: F. succinogenes subsp. succinogenes S85, Fibrobacter succinogenes S85, Fibrobacter succinogenes subsp. succinogenes S85
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