STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
nifH_1Nitrogenase iron protein; The key enzymatic reactions in nitrogen fixation are catalyzed by the nitrogenase complex, which has 2 components: the iron protein and the molybdenum-iron protein; Belongs to the NifH/BchL/ChlL family. (281 aa)    
Predicted Functional Partners:
FSU_1534
Putative nitrogenase, molybdenum-iron protein, beta subunit; Identified by similarity to SP:P11347; match to protein family HMM PF00148.
 
 0.984
FSU_1545
Putative nitrogenase molybdenum-iron protein, alpha subunit; Identified by similarity to SP:P55170; match to protein family HMM PF00148.
 0.984
FSU_1535
Putative nitrogenase molybdenum-iron protein, alpha subunit; Identified by similarity to SP:P00467; match to protein family HMM PF00148.
 0.983
FSU_1544
Putative nitrogenase molybdenum-iron protein, beta subunit; Identified by similarity to SP:P71527; match to protein family HMM PF00148.
 
 0.978
gdhA
NADP-specific glutamate dehydrogenase; Identified by similarity to SP:P00370; match to protein family HMM PF00208; match to protein family HMM PF02812; Belongs to the Glu/Leu/Phe/Val dehydrogenases family.
     
 0.904
nifH_2
Nitrogenase iron protein; The key enzymatic reactions in nitrogen fixation are catalyzed by the nitrogenase complex, which has 2 components: the iron protein and the molybdenum-iron protein; Belongs to the NifH/BchL/ChlL family.
  
  
 
0.900
glnN_1
Glutamine synthetase, type III; Identified by similarity to SP:P15623; match to protein family HMM PF00120; Belongs to the glutamine synthetase family.
     
  0.900
glnN_2
Glutamine synthetase, type III; Identified by similarity to SP:P15623; match to protein family HMM PF00120; Belongs to the glutamine synthetase family.
     
  0.900
FSU_1533
Putative FeMo cofactor biosynthesis protein NifB; Identified by match to protein family HMM PF04055.
 
  
 0.802
gapA
Glyceraldehyde 3-phosphate dehydrogenase A; Identified by similarity to SP:P06977; match to protein family HMM PF00044; match to protein family HMM PF02800; match to protein family HMM TIGR01534; Belongs to the glyceraldehyde-3-phosphate dehydrogenase family.
      
 0.652
Your Current Organism:
Fibrobacter succinogenes
NCBI taxonomy Id: 59374
Other names: F. succinogenes subsp. succinogenes S85, Fibrobacter succinogenes S85, Fibrobacter succinogenes subsp. succinogenes S85
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