Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
FSU_1543Hypothetical protein; Identified by glimmer; putative. (403 aa)    
Predicted Functional Partners:
FSU_1541
ABC transporter, ATP-binding protein; Identified by similarity to SP:P38046; match to protein family HMM PF00005.
  
    0.735
FSU_1540
ABC transporter, permease protein; Identified by match to protein family HMM PF00528.
       0.732
FSU_1542
Putative ABC transporter, periplasmic substrate-binding protein; Identified by similarity to GB:AAM01816.1; match to protein family HMM PF04069.
       0.732
FSU_0147
Sensor histidine kinase/response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF01627; match to protein family HMM PF02518.
     
  0.581
FSU_0067
Sensory box/GGDEF domain/EAL domain protein; Identified by match to protein family HMM PF00563; match to protein family HMM PF00990; match to protein family HMM TIGR00254.
    
  0.574
FSU_2295
Sensor histidine kinase/response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF02518.
     
  0.568
FSU_0748
Response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00563; match to protein family HMM PF00990; match to protein family HMM TIGR00254.
    
  0.529
FSU_2241
GGDEF/HAMP/Cache domain protein; Identified by match to protein family HMM PF00672; match to protein family HMM PF00990; match to protein family HMM PF02743; match to protein family HMM TIGR00254.
    
  0.521
FSU_1048
HAMP/GGDEF domain protein; Identified by match to protein family HMM PF00672; match to protein family HMM PF00990; match to protein family HMM TIGR00254.
    
  0.518
FSU_1721
Sensory box histidine kinase/response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF02518.
     
  0.501
Your Current Organism:
Fibrobacter succinogenes
NCBI taxonomy Id: 59374
Other names: F. succinogenes subsp. succinogenes S85, Fibrobacter succinogenes S85, Fibrobacter succinogenes subsp. succinogenes S85
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