Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
FSU_1555ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005. (267 aa)    
Predicted Functional Partners:
FSU_1554
ABC transporter, permease protein; Identified by match to protein family HMM PF00528.
 
 0.992
FSU_1552
Conserved hypothetical protein; Identified by similarity to GB:AAO15990.1.
 
 0.972
FSU_1540
ABC transporter, permease protein; Identified by match to protein family HMM PF00528.
 
 0.970
FSU_1551
Conserved hypothetical protein; Identified by similarity to GB:AAO15990.1.
 
 0.960
FSU_1542
Putative ABC transporter, periplasmic substrate-binding protein; Identified by similarity to GB:AAM01816.1; match to protein family HMM PF04069.
 
 0.940
FSU_1466
ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.
 
  
 
0.915
FSU_0511
Oligopeptide/dipeptide ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF08352; match to protein family HMM TIGR01727; Belongs to the ABC transporter superfamily.
 
     
0.900
FSU_1688
Oligopeptide/dipeptide ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF08352; match to protein family HMM TIGR01727; Belongs to the ABC transporter superfamily.
 
     
0.899
cysW
Sulfate ABC transporter, permease protein; Identified by similarity to SP:P16702; match to protein family HMM PF00528; match to protein family HMM TIGR00969; match to protein family HMM TIGR02140.
 
 
  
 0.861
cysT
Sulfate ABC transporter, permease protein; Part of the ABC transporter complex (TC 3.A.1.6.1) involved in sulfate/thiosulfate import.
 
 
  0.680
Your Current Organism:
Fibrobacter succinogenes
NCBI taxonomy Id: 59374
Other names: F. succinogenes subsp. succinogenes S85, Fibrobacter succinogenes S85, Fibrobacter succinogenes subsp. succinogenes S85
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