Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
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from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
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FSU_1556Aminotransferase, class I/II; Identified by match to protein family HMM PF00155. (403 aa)    
Predicted Functional Partners:
FSU_1537
Putative cystathionine beta/gamma-lyase; Identified by similarity to SP:Q9RAS9; match to protein family HMM PF01053.
 
 
 0.747
metH
5-methyltetrahydrofolate--homocysteine methyltransferase; Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate.
     
 0.695
metXW
Homoserine O-acetyltransferase/methionine biosynthesis protein; Transfers an acetyl group from acetyl-CoA to L-homoserine, forming acetyl-L-homoserine.
    
 0.626
FSU_1555
ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.
 
    0.584
FSU_1553
Cysteine synthase family protein; Identified by similarity to GB:AAG01002.1; match to protein family HMM PF00291.
    
 0.563
FSU_1554
ABC transporter, permease protein; Identified by match to protein family HMM PF00528.
 
     0.562
FSU_1002
Putative 5,10-methylenetetrahydrofolate reductase; Identified by similarity to GB:AAF64321.1; match to protein family HMM PF02219; Belongs to the methylenetetrahydrofolate reductase family.
    
 0.540
alr
Alanine racemase; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family.
     
 0.521
pepT
Peptidase T; Cleaves the N-terminal amino acid of tripeptides. Belongs to the peptidase M20B family.
    
 0.513
FSU_3220
Putative 1-aminocyclopropane-1-carboxylate deaminase; Identified by similarity to GB:BAA92150.1.
    
  0.504
Your Current Organism:
Fibrobacter succinogenes
NCBI taxonomy Id: 59374
Other names: F. succinogenes subsp. succinogenes S85, Fibrobacter succinogenes S85, Fibrobacter succinogenes subsp. succinogenes S85
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