Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
FSU_1557Transcriptional regulator, LysR family; Identified by match to protein family HMM PF00126; Belongs to the LysR transcriptional regulatory family. (314 aa)    
Predicted Functional Partners:
FSU_2205
Transcriptional regulator, LysR family; Identified by match to protein family HMM PF00126; Belongs to the LysR transcriptional regulatory family.
  
     0.715
FSU_1556
Aminotransferase, class I/II; Identified by match to protein family HMM PF00155.
       0.480
FSU_1558
Conserved hypothetical protein; Identified by similarity to GB:AAN24702.1.
       0.468
FSU_1559
Putative ABC transporter, permease protein; Identified by match to protein family HMM PF02687.
       0.468
FSU_1555
ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.
    
 0.417
FSU_1554
ABC transporter, permease protein; Identified by match to protein family HMM PF00528.
    
 0.416
Your Current Organism:
Fibrobacter succinogenes
NCBI taxonomy Id: 59374
Other names: F. succinogenes subsp. succinogenes S85, Fibrobacter succinogenes S85, Fibrobacter succinogenes subsp. succinogenes S85
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