Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| FSU_0978 | dnaJ | FSU_0978 | FSU_0184 | Conserved hypothetical protein TIGR00046; Specifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit. | Chaperone protein DnaJ; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, D [...] | 0.508 |
| FSU_0978 | prmA | FSU_0978 | FSU_1561 | Conserved hypothetical protein TIGR00046; Specifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit. | Ribosomal protein L11 methyltransferase; Identified by similarity to SP:P28637; match to protein family HMM PF05175; match to protein family HMM PF06325; match to protein family HMM PF08241. | 0.794 |
| FSU_1090 | prmA | FSU_1090 | FSU_1561 | Identified by match to protein family HMM PF01207. | Ribosomal protein L11 methyltransferase; Identified by similarity to SP:P28637; match to protein family HMM PF05175; match to protein family HMM PF06325; match to protein family HMM PF08241. | 0.541 |
| FSU_1562 | prmA | FSU_1562 | FSU_1561 | Fic family protein; Identified by match to protein family HMM PF02661. | Ribosomal protein L11 methyltransferase; Identified by similarity to SP:P28637; match to protein family HMM PF05175; match to protein family HMM PF06325; match to protein family HMM PF08241. | 0.550 |
| dnaJ | FSU_0978 | FSU_0184 | FSU_0978 | Chaperone protein DnaJ; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, D [...] | Conserved hypothetical protein TIGR00046; Specifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit. | 0.508 |
| dnaJ | prmA | FSU_0184 | FSU_1561 | Chaperone protein DnaJ; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, D [...] | Ribosomal protein L11 methyltransferase; Identified by similarity to SP:P28637; match to protein family HMM PF05175; match to protein family HMM PF06325; match to protein family HMM PF08241. | 0.820 |
| dnaJ | rplK | FSU_0184 | FSU_1738 | Chaperone protein DnaJ; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, D [...] | Ribosomal protein L11; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. | 0.914 |
| prmA | FSU_0978 | FSU_1561 | FSU_0978 | Ribosomal protein L11 methyltransferase; Identified by similarity to SP:P28637; match to protein family HMM PF05175; match to protein family HMM PF06325; match to protein family HMM PF08241. | Conserved hypothetical protein TIGR00046; Specifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit. | 0.794 |
| prmA | FSU_1090 | FSU_1561 | FSU_1090 | Ribosomal protein L11 methyltransferase; Identified by similarity to SP:P28637; match to protein family HMM PF05175; match to protein family HMM PF06325; match to protein family HMM PF08241. | Identified by match to protein family HMM PF01207. | 0.541 |
| prmA | FSU_1562 | FSU_1561 | FSU_1562 | Ribosomal protein L11 methyltransferase; Identified by similarity to SP:P28637; match to protein family HMM PF05175; match to protein family HMM PF06325; match to protein family HMM PF08241. | Fic family protein; Identified by match to protein family HMM PF02661. | 0.550 |
| prmA | dnaJ | FSU_1561 | FSU_0184 | Ribosomal protein L11 methyltransferase; Identified by similarity to SP:P28637; match to protein family HMM PF05175; match to protein family HMM PF06325; match to protein family HMM PF08241. | Chaperone protein DnaJ; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, D [...] | 0.820 |
| prmA | putP | FSU_1561 | FSU_2643 | Ribosomal protein L11 methyltransferase; Identified by similarity to SP:P28637; match to protein family HMM PF05175; match to protein family HMM PF06325; match to protein family HMM PF08241. | Sodium/proline symporter; Catalyzes the sodium-dependent uptake of extracellular L- proline; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family. | 0.421 |
| prmA | rlmH | FSU_1561 | FSU_0414 | Ribosomal protein L11 methyltransferase; Identified by similarity to SP:P28637; match to protein family HMM PF05175; match to protein family HMM PF06325; match to protein family HMM PF08241. | Conserved hypothetical protein; Specifically methylates the pseudouridine at position 1915 (m3Psi1915) in 23S rRNA; Belongs to the RNA methyltransferase RlmH family. | 0.415 |
| prmA | rplK | FSU_1561 | FSU_1738 | Ribosomal protein L11 methyltransferase; Identified by similarity to SP:P28637; match to protein family HMM PF05175; match to protein family HMM PF06325; match to protein family HMM PF08241. | Ribosomal protein L11; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. | 0.902 |
| prmA | rsmB | FSU_1561 | FSU_2777 | Ribosomal protein L11 methyltransferase; Identified by similarity to SP:P28637; match to protein family HMM PF05175; match to protein family HMM PF06325; match to protein family HMM PF08241. | Ribosomal RNA small subunit methyltransferase B; Identified by match to protein family HMM PF01029; match to protein family HMM PF01189; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family. | 0.430 |
| putP | prmA | FSU_2643 | FSU_1561 | Sodium/proline symporter; Catalyzes the sodium-dependent uptake of extracellular L- proline; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family. | Ribosomal protein L11 methyltransferase; Identified by similarity to SP:P28637; match to protein family HMM PF05175; match to protein family HMM PF06325; match to protein family HMM PF08241. | 0.421 |
| rlmH | prmA | FSU_0414 | FSU_1561 | Conserved hypothetical protein; Specifically methylates the pseudouridine at position 1915 (m3Psi1915) in 23S rRNA; Belongs to the RNA methyltransferase RlmH family. | Ribosomal protein L11 methyltransferase; Identified by similarity to SP:P28637; match to protein family HMM PF05175; match to protein family HMM PF06325; match to protein family HMM PF08241. | 0.415 |
| rplK | dnaJ | FSU_1738 | FSU_0184 | Ribosomal protein L11; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. | Chaperone protein DnaJ; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, D [...] | 0.914 |
| rplK | prmA | FSU_1738 | FSU_1561 | Ribosomal protein L11; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. | Ribosomal protein L11 methyltransferase; Identified by similarity to SP:P28637; match to protein family HMM PF05175; match to protein family HMM PF06325; match to protein family HMM PF08241. | 0.902 |
| rsmB | prmA | FSU_2777 | FSU_1561 | Ribosomal RNA small subunit methyltransferase B; Identified by match to protein family HMM PF01029; match to protein family HMM PF01189; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family. | Ribosomal protein L11 methyltransferase; Identified by similarity to SP:P28637; match to protein family HMM PF05175; match to protein family HMM PF06325; match to protein family HMM PF08241. | 0.430 |