STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
FSU_1606Putative ABC transporter, permease protein; Identified by similarity to GB:AAP05370.1; match to protein family HMM PF02405. (262 aa)    
Predicted Functional Partners:
FSU_1181
ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.
 
 0.928
FSU_1607
ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.
 
 0.902
FSU_2763
ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.
 
 0.898
FSU_1449
Identified by match to protein family HMM PF02470.
 
 0.796
hisG
ATP phosphoribosyltransferase; Catalyzes the condensation of ATP and 5-phosphoribose 1- diphosphate to form N'-(5'-phosphoribosyl)-ATP (PR-ATP). Has a crucial role in the pathway because the rate of histidine biosynthesis seems to be controlled primarily by regulation of HisG enzymatic activity. Belongs to the ATP phosphoribosyltransferase family. Long subfamily.
  
    0.598
hisE
phosphoribosyl-ATP diphosphatase; Identified by similarity to SP:Q9Z471; match to protein family HMM PF01503; match to protein family HMM TIGR03188; Belongs to the PRA-PH family.
       0.597
FSU_1603
EAL domain protein; Identified by match to protein family HMM PF00563.
       0.597
recR
Recombination protein RecR; May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO.
       0.597
ysxC
Ribosome biogenesis GTP-binding protein YsxC; Necessary for normal cell division and for the maintenance of normal septation; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngB GTPase family.
  
    0.597
FSU_1697
Identified by match to protein family HMM PF02470.
 
 0.590
Your Current Organism:
Fibrobacter succinogenes
NCBI taxonomy Id: 59374
Other names: F. succinogenes subsp. succinogenes S85, Fibrobacter succinogenes S85, Fibrobacter succinogenes subsp. succinogenes S85
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