STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
FSU_1607ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005. (256 aa)    
Predicted Functional Partners:
FSU_1688
Oligopeptide/dipeptide ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF08352; match to protein family HMM TIGR01727; Belongs to the ABC transporter superfamily.
 
    
0.906
FSU_1606
Putative ABC transporter, permease protein; Identified by similarity to GB:AAP05370.1; match to protein family HMM PF02405.
 
 0.902
FSU_0511
Oligopeptide/dipeptide ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF08352; match to protein family HMM TIGR01727; Belongs to the ABC transporter superfamily.
 
     
0.900
FSU_2760
ABC transporter, ATP-binding protein; Identified by similarity to OMNI:NTL01RS1379; match to protein family HMM PF00005.
 
    
0.890
FSU_1687
Putative oligopeptide/dipeptide ABC transporter, ATP-binding protein; Identified by similarity to PIR:S75333; match to protein family HMM PF00005.
 
    
0.846
FSU_1182
Putative ABC transporter, permease protein; Identified by similarity to PIR:A97716; match to protein family HMM PF02405.
 
 0.765
FSU_1296
Putative membrane protein; Identified by match to protein family HMM PF02405.
 
 0.760
FSU_2764
Putative ABC transporter, permease protein; Identified by similarity to GB:BAC51330.1; match to protein family HMM PF02405.
 
 0.746
FSU_1661
Putative translation elongation factor G; Identified by similarity to SP:P13551; match to protein family HMM PF00009; match to protein family HMM PF00679; match to protein family HMM TIGR00231.
  
     0.719
rpsE
Ribosomal protein S5; Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body. Belongs to the universal ribosomal protein uS5 family.
  
     0.620
Your Current Organism:
Fibrobacter succinogenes
NCBI taxonomy Id: 59374
Other names: F. succinogenes subsp. succinogenes S85, Fibrobacter succinogenes S85, Fibrobacter succinogenes subsp. succinogenes S85
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