STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
FSU_1607ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005. (256 aa)    
Predicted Functional Partners:
FSU_1606
Putative ABC transporter, permease protein; Identified by similarity to GB:AAP05370.1; match to protein family HMM PF02405.
 
 0.971
FSU_1182
Putative ABC transporter, permease protein; Identified by similarity to PIR:A97716; match to protein family HMM PF02405.
 0.929
FSU_1296
Putative membrane protein; Identified by match to protein family HMM PF02405.
 0.928
FSU_2763
ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.
  
  
 
0.925
FSU_2764
Putative ABC transporter, permease protein; Identified by similarity to GB:BAC51330.1; match to protein family HMM PF02405.
 
 0.923
FSU_1181
ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.
  
  
 
0.922
FSU_1688
Oligopeptide/dipeptide ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF08352; match to protein family HMM TIGR01727; Belongs to the ABC transporter superfamily.
 
    
0.907
FSU_0511
Oligopeptide/dipeptide ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF08352; match to protein family HMM TIGR01727; Belongs to the ABC transporter superfamily.
 
     
0.900
FSU_2760
ABC transporter, ATP-binding protein; Identified by similarity to OMNI:NTL01RS1379; match to protein family HMM PF00005.
 
    
0.891
FSU_2141
Identified by match to protein family HMM PF02470.
 
 0.880
Your Current Organism:
Fibrobacter succinogenes
NCBI taxonomy Id: 59374
Other names: F. succinogenes subsp. succinogenes S85, Fibrobacter succinogenes S85, Fibrobacter succinogenes subsp. succinogenes S85
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