Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
FSU_1616Hypothetical protein; Identified by glimmer; putative. (337 aa)    
Predicted Functional Partners:
rpoB
DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.592
FSU_1617
Putative deoxyguanosinetriphosphate triphosphohydrolase; Identified by match to protein family HMM PF01966; Belongs to the dGTPase family. Type 2 subfamily.
       0.584
FSU_1618
Hypothetical protein; Identified by glimmer; putative.
       0.584
FSU_2126
Putative DnaQ family exonuclease/DinG family helicase; Identified by match to protein family HMM PF00929; match to protein family HMM TIGR00573.
  
 
  0.534
FSU_1614
Conserved hypothetical protein; Identified by similarity to GB:CAD78495.1; match to protein family HMM PF07728.
  
    0.477
FSU_1615
Hypothetical protein; Identified by glimmer; putative.
       0.470
leuS
leucine--tRNA ligase; Identified by similarity to SP:P36430; match to protein family HMM PF00133; match to protein family HMM PF08264; match to protein family HMM PF09334; match to protein family HMM TIGR00396; Belongs to the class-I aminoacyl-tRNA synthetase family.
       0.456
FSU_1613
Conserved hypothetical protein; Identified by similarity to GB:CAD78494.1.
       0.428
Your Current Organism:
Fibrobacter succinogenes
NCBI taxonomy Id: 59374
Other names: F. succinogenes subsp. succinogenes S85, Fibrobacter succinogenes S85, Fibrobacter succinogenes subsp. succinogenes S85
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