STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
FSU_1626Identified by match to protein family HMM PF01564. (1035 aa)    
Predicted Functional Partners:
nspC
Carboxynorspermidine decarboxylase; Identified by match to protein family HMM PF00278; match to protein family HMM TIGR01047.
  
 0.922
FSU_0240
Hydrolase, carbon-nitrogen family; Identified by match to protein family HMM PF00795.
  
 
 0.915
FSU_0387
Hydrolase, ATZ/TRZ family; Identified by match to protein family HMM PF01979; match to protein family HMM PF07969.
   
  0.908
FSU_0522
Tetratricopeptide repeat protein; Identified by match to protein family HMM PF00515; match to protein family HMM PF07719.
 
     0.724
FSU_2556
Conserved domain protein; Identified by similarity to GB:AAO52466.1; match to protein family HMM TIGR02148.
  
     0.716
FSU_0027
Hypothetical protein; Identified by glimmer; putative.
  
     0.710
FSU_0622
Putative membrane protein; Identified by match to protein family HMM PF08305.
  
    0.703
FSU_2502
Fibro-slime domain protein; Identified by match to protein family HMM TIGR02148.
  
     0.688
FSU_1310
Hypothetical protein; Identified by glimmer; putative.
 
     0.663
FSU_0934
Putative transporter; Identified by similarity to GB:AAN68395.1.
  
     0.654
Your Current Organism:
Fibrobacter succinogenes
NCBI taxonomy Id: 59374
Other names: F. succinogenes subsp. succinogenes S85, Fibrobacter succinogenes S85, Fibrobacter succinogenes subsp. succinogenes S85
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.