Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
Experiments
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[Homology]
Score
FSU_1638Hypothetical protein; Identified by glimmer; putative. (918 aa)    
Predicted Functional Partners:
FSU_1637
Conserved domain protein; Identified by similarity to GB:AAO77353.1.
       0.625
FSU_2681
Hypothetical protein; Identified by glimmer; putative.
  
     0.588
FSU_1639
Putative nuclease SbcCD, C subunit; Identified by match to protein family HMM PF02463.
       0.578
sbcD
Nuclease SbcCD, D subunit; SbcCD cleaves DNA hairpin structures. These structures can inhibit DNA replication and are intermediates in certain DNA recombination reactions. The complex acts as a 3'->5' double strand exonuclease that can open hairpins. It also has a 5' single-strand endonuclease activity; Belongs to the SbcD family.
       0.574
FSU_1034
Conserved domain protein; Identified by similarity to GB:AAL95231.1.
  
     0.557
FSU_1636
Diguanylate cyclase (GGDEF) domain protein; Identified by match to protein family HMM PF00990; match to protein family HMM TIGR00254.
   
   0.540
ribA
Riboflavin biosynthesis protein RibA; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family.
    
  0.515
FSU_2501
GGDEF/FHA domain protein; Identified by match to protein family HMM PF00498; match to protein family HMM PF00990; match to protein family HMM TIGR00254.
  
 0.503
FSU_0307
Internalin domain protein; Identified by similarity to SP:P25146; match to protein family HMM PF09479; match to protein family HMM TIGR02543.
  
    0.481
FSU_1634
Hypothetical protein; Identified by glimmer; putative.
       0.458
Your Current Organism:
Fibrobacter succinogenes
NCBI taxonomy Id: 59374
Other names: F. succinogenes subsp. succinogenes S85, Fibrobacter succinogenes S85, Fibrobacter succinogenes subsp. succinogenes S85
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