FSU_1639 protein (Fibrobacter succinogenes) - STRING interaction network

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Score

FSU_1639

Putative nuclease SbcCD, C subunit; Identified by match to protein family HMM PF02463. (1182 aa)

Predicted Functional Partners:

sbcD

0.999

polA

0.959

FSU_1321

0.935

recA

0.694

FSU_2126

0.690

FSU_2509

0.630

FSU_2904

0.630

FSU_2501

0.616

hepA

0.593

FSU_1638

0.578

Your Current Organism:

Fibrobacter succinogenes

NCBI taxonomy Id: 59374
Other names: F. succinogenes subsp. succinogenes S85, Fibrobacter succinogenes S85, Fibrobacter succinogenes subsp. succinogenes S85

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
FSU_1321	FSU_1639	FSU_1321	FSU_1639	ATP-dependent DNA helicase, RecQ family/UvrD/REP helicase domain protein; Identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF00580; match to protein family HMM TIGR00614.	Putative nuclease SbcCD, C subunit; Identified by match to protein family HMM PF02463.	0.935
FSU_1321	FSU_2126	FSU_1321	FSU_2126	ATP-dependent DNA helicase, RecQ family/UvrD/REP helicase domain protein; Identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF00580; match to protein family HMM TIGR00614.	Putative DnaQ family exonuclease/DinG family helicase; Identified by match to protein family HMM PF00929; match to protein family HMM TIGR00573.	0.817
FSU_1321	FSU_2509	FSU_1321	FSU_2509	ATP-dependent DNA helicase, RecQ family/UvrD/REP helicase domain protein; Identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF00580; match to protein family HMM TIGR00614.	Putative DNA topoisomerase III; Identified by match to protein family HMM PF01131; match to protein family HMM PF01751; match to protein family HMM TIGR01056.	0.974
FSU_1321	FSU_2904	FSU_1321	FSU_2904	ATP-dependent DNA helicase, RecQ family/UvrD/REP helicase domain protein; Identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF00580; match to protein family HMM TIGR00614.	Putative DNA topoisomerase III; Identified by match to protein family HMM PF01131; match to protein family HMM PF01751.	0.974
FSU_1321	hepA	FSU_1321	FSU_0598	ATP-dependent DNA helicase, RecQ family/UvrD/REP helicase domain protein; Identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF00580; match to protein family HMM TIGR00614.	RNA polymerase-associated protein HepA; Identified by similarity to SP:P23852; match to protein family HMM PF00176; match to protein family HMM PF00271.	0.945
FSU_1321	polA	FSU_1321	FSU_1227	ATP-dependent DNA helicase, RecQ family/UvrD/REP helicase domain protein; Identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF00580; match to protein family HMM TIGR00614.	DNA-directed DNA polymerase; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.	0.990
FSU_1321	recA	FSU_1321	FSU_2927	ATP-dependent DNA helicase, RecQ family/UvrD/REP helicase domain protein; Identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF00580; match to protein family HMM TIGR00614.	RecA protein; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family.	0.963
FSU_1321	sbcD	FSU_1321	FSU_1640	ATP-dependent DNA helicase, RecQ family/UvrD/REP helicase domain protein; Identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF00580; match to protein family HMM TIGR00614.	Nuclease SbcCD, D subunit; SbcCD cleaves DNA hairpin structures. These structures can inhibit DNA replication and are intermediates in certain DNA recombination reactions. The complex acts as a 3'->5' double strand exonuclease that can open hairpins. It also has a 5' single-strand endonuclease activity; Belongs to the SbcD family.	0.973
FSU_1638	FSU_1639	FSU_1638	FSU_1639	Hypothetical protein; Identified by glimmer; putative.	Putative nuclease SbcCD, C subunit; Identified by match to protein family HMM PF02463.	0.578
FSU_1638	FSU_2501	FSU_1638	FSU_2501	Hypothetical protein; Identified by glimmer; putative.	GGDEF/FHA domain protein; Identified by match to protein family HMM PF00498; match to protein family HMM PF00990; match to protein family HMM TIGR00254.	0.473
FSU_1638	sbcD	FSU_1638	FSU_1640	Hypothetical protein; Identified by glimmer; putative.	Nuclease SbcCD, D subunit; SbcCD cleaves DNA hairpin structures. These structures can inhibit DNA replication and are intermediates in certain DNA recombination reactions. The complex acts as a 3'->5' double strand exonuclease that can open hairpins. It also has a 5' single-strand endonuclease activity; Belongs to the SbcD family.	0.576
FSU_1639	FSU_1321	FSU_1639	FSU_1321	Putative nuclease SbcCD, C subunit; Identified by match to protein family HMM PF02463.	ATP-dependent DNA helicase, RecQ family/UvrD/REP helicase domain protein; Identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF00580; match to protein family HMM TIGR00614.	0.935
FSU_1639	FSU_1638	FSU_1639	FSU_1638	Putative nuclease SbcCD, C subunit; Identified by match to protein family HMM PF02463.	Hypothetical protein; Identified by glimmer; putative.	0.578
FSU_1639	FSU_2126	FSU_1639	FSU_2126	Putative nuclease SbcCD, C subunit; Identified by match to protein family HMM PF02463.	Putative DnaQ family exonuclease/DinG family helicase; Identified by match to protein family HMM PF00929; match to protein family HMM TIGR00573.	0.690
FSU_1639	FSU_2501	FSU_1639	FSU_2501	Putative nuclease SbcCD, C subunit; Identified by match to protein family HMM PF02463.	GGDEF/FHA domain protein; Identified by match to protein family HMM PF00498; match to protein family HMM PF00990; match to protein family HMM TIGR00254.	0.616
FSU_1639	FSU_2509	FSU_1639	FSU_2509	Putative nuclease SbcCD, C subunit; Identified by match to protein family HMM PF02463.	Putative DNA topoisomerase III; Identified by match to protein family HMM PF01131; match to protein family HMM PF01751; match to protein family HMM TIGR01056.	0.630
FSU_1639	FSU_2904	FSU_1639	FSU_2904	Putative nuclease SbcCD, C subunit; Identified by match to protein family HMM PF02463.	Putative DNA topoisomerase III; Identified by match to protein family HMM PF01131; match to protein family HMM PF01751.	0.630
FSU_1639	hepA	FSU_1639	FSU_0598	Putative nuclease SbcCD, C subunit; Identified by match to protein family HMM PF02463.	RNA polymerase-associated protein HepA; Identified by similarity to SP:P23852; match to protein family HMM PF00176; match to protein family HMM PF00271.	0.593
FSU_1639	polA	FSU_1639	FSU_1227	Putative nuclease SbcCD, C subunit; Identified by match to protein family HMM PF02463.	DNA-directed DNA polymerase; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.	0.959
FSU_1639	recA	FSU_1639	FSU_2927	Putative nuclease SbcCD, C subunit; Identified by match to protein family HMM PF02463.	RecA protein; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family.	0.694