STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
recBExodeoxyribonuclease V, beta subunit; Identified by similarity to SP:P08394; match to protein family HMM PF00580. (1266 aa)    
Predicted Functional Partners:
recD
Exodeoxyribonuclease V, alpha subunit; Identified by similarity to SP:P04993.
 
 0.980
FSU_1321
ATP-dependent DNA helicase, RecQ family/UvrD/REP helicase domain protein; Identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF00580; match to protein family HMM TIGR00614.
    
 0.647
FSU_2349
Conserved domain protein; Identified by similarity to GB:AAK76811.1; match to protein family HMM TIGR03296.
  
     0.615
FSU_2141
Identified by match to protein family HMM PF02470.
  
     0.603
FSU_2368
Conserved domain protein; Identified by similarity to PIR:D83762; match to protein family HMM TIGR02171.
  
     0.601
FSU_2398
Tetratricopeptide repeat protein; Identified by match to protein family HMM PF00515.
  
    0.592
FSU_2397
Tetratricopeptide repeat protein; Identified by match to protein family HMM PF00515; match to protein family HMM PF07719.
  
     0.571
FSU_1646
Hypothetical protein; Identified by glimmer; putative.
       0.568
FSU_2708
Helicase, RecD/TraA family; Identified by match to protein family HMM PF01336; match to protein family HMM TIGR01448.
 
 
 0.564
FSU_1669
Conserved domain protein; Identified by similarity to GB:AAB72118.1; match to protein family HMM TIGR02171.
  
     0.542
Your Current Organism:
Fibrobacter succinogenes
NCBI taxonomy Id: 59374
Other names: F. succinogenes subsp. succinogenes S85, Fibrobacter succinogenes S85, Fibrobacter succinogenes subsp. succinogenes S85
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.