STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
FSU_1652Transcriptional regulator, Fur family; Identified by match to protein family HMM PF01475; Belongs to the Fur family. (133 aa)    
Predicted Functional Partners:
FSU_1655
Putative metal ABC transporter, permease protein; Identified by match to protein family HMM PF00950.
 
  
 0.764
FSU_1653
Putative metal ABC transporter, periplasmic metal-binding adhesion liprotein; Identified by similarity to SP:Q53891; match to protein family HMM PF01297.
 
  
 0.763
FSU_1654
Putative metal ABC transporter, ATP-binding protein; Identified by similarity to SP:Q9PJX9; match to protein family HMM PF00005.
 
  
 0.758
FSU_1651
Identified by match to protein family HMM PF02492; match to protein family HMM PF07683.
     
 0.601
FSU_2166
Iron-dependent repressor; Identified by match to protein family HMM PF01325; match to protein family HMM PF02742.
  
  
 0.454
gltB
Glutamate synthase, large subunit; Identified by similarity to SP:P39812; match to protein family HMM PF00310; match to protein family HMM PF01493; match to protein family HMM PF01645; match to protein family HMM PF04898.
     
 0.436
Your Current Organism:
Fibrobacter succinogenes
NCBI taxonomy Id: 59374
Other names: F. succinogenes subsp. succinogenes S85, Fibrobacter succinogenes S85, Fibrobacter succinogenes subsp. succinogenes S85
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