Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
FSU_1654Putative metal ABC transporter, ATP-binding protein; Identified by similarity to SP:Q9PJX9; match to protein family HMM PF00005. (226 aa)    
Predicted Functional Partners:
FSU_1655
Putative metal ABC transporter, permease protein; Identified by match to protein family HMM PF00950.
 
 0.996
FSU_3083
Putative metal ABC transporter, permease protein; Identified by similarity to GB:AAD56938.1; match to protein family HMM PF00950.
 0.991
FSU_1653
Putative metal ABC transporter, periplasmic metal-binding adhesion liprotein; Identified by similarity to SP:Q53891; match to protein family HMM PF01297.
 
 
 0.988
FSU_0976
Putative metal ABC transporter, periplasmic metal-binding adhesion liprotein; Identified by match to protein family HMM PF01297; Belongs to the bacterial solute-binding protein 9 family.
 
 
 0.944
FSU_1652
Transcriptional regulator, Fur family; Identified by match to protein family HMM PF01475; Belongs to the Fur family.
 
  
 0.757
FSU_1656
Hypothetical protein; Identified by glimmer; putative.
       0.659
FSU_1657
Hypothetical protein; Identified by glimmer; putative.
       0.602
FSU_0511
Oligopeptide/dipeptide ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF08352; match to protein family HMM TIGR01727; Belongs to the ABC transporter superfamily.
 
      0.598
FSU_2166
Iron-dependent repressor; Identified by match to protein family HMM PF01325; match to protein family HMM PF02742.
  
 
 0.560
FSU_1659
Conserved hypothetical protein; Identified by similarity to PIR:D83547.
  
  
 0.488
Your Current Organism:
Fibrobacter succinogenes
NCBI taxonomy Id: 59374
Other names: F. succinogenes subsp. succinogenes S85, Fibrobacter succinogenes S85, Fibrobacter succinogenes subsp. succinogenes S85
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