Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
FSU_1660Conserved hypothetical protein; Identified by similarity to PIR:B87135; match to protein family HMM PF01882. (301 aa)    
Predicted Functional Partners:
FSU_1670
ATPase, AAA family; Identified by match to protein family HMM PF07726; match to protein family HMM PF07728.
  
 0.815
FSU_1454
BatB protein; Identified by similarity to GP:4838139; match to protein family HMM PF00092.
 
    0.794
FSU_1457
BatA protein; Identified by similarity to GB:AAD30858.1; match to protein family HMM PF00092.
 
    0.794
FSU_1305
Putative BatD protein.
 
  
 0.789
FSU_1306
Putative BatE protein; Identified by match to protein family HMM PF00515; match to protein family HMM PF07719.
 
  
 0.783
FSU_2147
Tetratricopeptide repeat protein; Identified by match to protein family HMM PF00515; match to protein family HMM PF07719.
 
  
 0.712
FSU_1659
Conserved hypothetical protein; Identified by similarity to PIR:D83547.
       0.561
FSU_1905
Conserved hypothetical protein; Identified by similarity to GB:AAM71309.1.
 
    0.551
FSU_1658
Hypothetical protein; Identified by glimmer; putative.
       0.521
FSU_0522
Tetratricopeptide repeat protein; Identified by match to protein family HMM PF00515; match to protein family HMM PF07719.
  
  
 0.442
Your Current Organism:
Fibrobacter succinogenes
NCBI taxonomy Id: 59374
Other names: F. succinogenes subsp. succinogenes S85, Fibrobacter succinogenes S85, Fibrobacter succinogenes subsp. succinogenes S85
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