STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
FSU_1675TfoX N-terminal domain protein; Identified by match to protein family HMM PF04993. (105 aa)    
Predicted Functional Partners:
cobB
cobB protein; Identified by similarity to GB:AAC78722.1; match to protein family HMM PF02146; Belongs to the sirtuin family. Class III subfamily.
    
   0.761
FSU_1676
Multidrug resistance protein, SMR family; Identified by similarity to GP:12024949; match to protein family HMM PF00893.
       0.589
FSU_1677
Hypothetical protein; Identified by glimmer; putative.
       0.535
hisA
1-(5-phosphoribosyl)-5-((5'-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase; Identified by similarity to SP:P40545; match to protein family HMM PF00977; match to protein family HMM TIGR02129; Belongs to the HisA/HisF family.
    
  0.508
hisE
phosphoribosyl-ATP diphosphatase; Identified by similarity to SP:Q9Z471; match to protein family HMM PF01503; match to protein family HMM TIGR03188; Belongs to the PRA-PH family.
    
  0.506
FSU_0354
Conserved hypothetical protein; Identified by similarity to PIR:H97271.
  
     0.456
FSU_1674
Putative lipoprotein.
       0.447
Your Current Organism:
Fibrobacter succinogenes
NCBI taxonomy Id: 59374
Other names: F. succinogenes subsp. succinogenes S85, Fibrobacter succinogenes S85, Fibrobacter succinogenes subsp. succinogenes S85
Server load: low (12%) [HD]