STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
FSU_1695Beta-lactamase; Identified by match to protein family HMM PF00144. (347 aa)    
Predicted Functional Partners:
FSU_0513
Conserved hypothetical protein; Identified by similarity to GB:AAM23515.1; match to protein family HMM PF07075.
  
 0.983
FSU_2249
Identified by match to protein family HMM PF00933.
 
 0.976
dacB
D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase; Identified by similarity to SP:P39844; match to protein family HMM PF02113; match to protein family HMM PF07313; match to protein family HMM TIGR00666.
 
  
 0.692
FSU_2592
Identified by match to protein family HMM PF00933; match to protein family HMM PF01915.
 
 0.677
guaA
GMP synthase; Identified by similarity to SP:P04079; match to protein family HMM PF00117; match to protein family HMM PF00958; match to protein family HMM TIGR00888.
     
 0.640
FSU_2250
Putative microcin immunity protein; Identified by similarity to SP:Q47511; match to protein family HMM PF02016.
 
     0.595
guaB
Inosine-5'-monophosphate dehydrogenase; Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate-limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth. Belongs to the IMPDH/GMPR family.
     
  0.583
FSU_2693
Identified by match to protein family HMM PF00474; match to protein family HMM TIGR00813; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.
     0.508
FSU_0854
Serine-type D-Ala-D-Ala carboxypeptidase; Identified by match to protein family HMM PF02557.
     
  0.483
gmk
Guanylate kinase; Essential for recycling GMP and indirectly, cGMP.
    
  0.472
Your Current Organism:
Fibrobacter succinogenes
NCBI taxonomy Id: 59374
Other names: F. succinogenes subsp. succinogenes S85, Fibrobacter succinogenes S85, Fibrobacter succinogenes subsp. succinogenes S85
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