STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
FSU_1701ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005. (242 aa)    
Predicted Functional Partners:
FSU_1703
Hypothetical protein; Identified by glimmer; putative.
  
 0.998
FSU_2691
Putative membrane protein; Identified by match to protein family HMM PF03739; overlaps another CDS with the same product name.
 
 
 0.982
FSU_2690
Putative membrane protein; Identified by match to protein family HMM PF03739; overlaps another CDS with the same product name.
 
 
 0.980
FSU_1702
Conserved domain protein; Identified by similarity to GB:AAO78954.1.
  
  
 0.974
FSU_3055
ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.
    
0.912
cysW
Sulfate ABC transporter, permease protein; Identified by similarity to SP:P16702; match to protein family HMM PF00528; match to protein family HMM TIGR00969; match to protein family HMM TIGR02140.
 
      0.895
cysT
Sulfate ABC transporter, permease protein; Part of the ABC transporter complex (TC 3.A.1.6.1) involved in sulfate/thiosulfate import.
 
      0.882
rpoN
RNA polymerase sigma-54 factor; Identified by similarity to GB:AAF29509.1; match to protein family HMM PF00309; match to protein family HMM PF04552; match to protein family HMM PF04963; match to protein family HMM TIGR02395.
  
  
 0.816
lpxA
acyl-[acyl-carrier-protein]--UDP-N- acetylglucosamine O-acyltransferase; Identified by similarity to SP:P10440; match to protein family HMM PF00132; match to protein family HMM TIGR01852.
 
  
 0.807
lpxB
lipid-A-disaccharide synthetase; Identified by similarity to SP:P10441; match to protein family HMM PF02684; Belongs to the LpxB family.
 
   
 0.757
Your Current Organism:
Fibrobacter succinogenes
NCBI taxonomy Id: 59374
Other names: F. succinogenes subsp. succinogenes S85, Fibrobacter succinogenes S85, Fibrobacter succinogenes subsp. succinogenes S85
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