Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
FSU_1717Putative membrane protein; Identified by match to protein family HMM PF01925. (256 aa)    
Predicted Functional Partners:
FSU_0300
Siroheme synthase; Identified by match to protein family HMM PF01903; match to protein family HMM TIGR01470.
    
 0.492
hemDX
Porphyrin biosynthesis protein HemDX; Also 4.2.1.75; identified by similarity to GB:AAK00606.1; match to protein family HMM PF00590; match to protein family HMM PF02602; match to protein family HMM TIGR01469.
    
 0.455
FSU_0728
Conserved domain protein; Identified by similarity to GB:AAO78735.1; match to protein family HMM PF09603; match to protein family HMM TIGR02145.
  
     0.445
FSU_3050
Putative lipoprotein; Identified by match to protein family HMM PF09603; match to protein family HMM TIGR02145.
  
     0.420
FSU_0982
Putative lipoprotein; Identified by match to protein family HMM PF09603; match to protein family HMM TIGR02145.
  
     0.419
FSU_0759
Conserved domain protein; Identified by similarity to OMNI:NTL01FN0619; match to protein family HMM PF07661; match to protein family HMM TIGR02145.
  
     0.407
Your Current Organism:
Fibrobacter succinogenes
NCBI taxonomy Id: 59374
Other names: F. succinogenes subsp. succinogenes S85, Fibrobacter succinogenes S85, Fibrobacter succinogenes subsp. succinogenes S85
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