STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
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Textmining
[Homology]
Score
FSU_1729Mannanase domain protein; Identified by similarity to SP:P55278; Belongs to the glycosyl hydrolase 26 family. (382 aa)    
Predicted Functional Partners:
FSU_2528
Rhamnogalacturonan lyase; Identified by similarity to GB:AAK20911.1; match to protein family HMM PF01839.
  
  
  0.608
FSU_0196
Putative mannanase; Identified by similarity to SP:P51529; match to protein family HMM PF00150; match to protein family HMM PF02018; Belongs to the glycosyl hydrolase 5 (cellulase A) family.
  
  
 0.579
FSU_2265
Putative xylanase; Identified by similarity to GB:AAL16415.1; match to protein family HMM PF03422.
  
   
 0.547
FSU_1728
Transcriptional regulator, GntR family; Identified by match to protein family HMM PF00392.
       0.534
FSU_2130
Putative acetylxylan esterase; Identified by similarity to GB:AAB69091.1.
  
  
  0.520
FSU_0206
Xylanase; Identified by similarity to GB:AAB53151.1; match to protein family HMM PF02055; Belongs to the glycosyl hydrolase 30 family.
  
   
 0.514
FSU_2150
Glycosyl hydrolase/glycosyltransferase; Identified by match to protein family HMM PF00150; match to protein family HMM PF00535.
    
  0.507
FSU_1115
Putative pectinesterase; Identified by match to protein family HMM PF01095; match to protein family HMM PF03422.
  
  
 0.498
FSU_1373
Carbohydrate-binding protein, CBM6 family; Identified by match to protein family HMM PF03422.
  
     0.495
FSU_1165
Beta-1,4-mannanase, man26B; Identified by match to protein family HMM PF02156; Belongs to the glycosyl hydrolase 26 family.
  
     0.493
Your Current Organism:
Fibrobacter succinogenes
NCBI taxonomy Id: 59374
Other names: F. succinogenes subsp. succinogenes S85, Fibrobacter succinogenes S85, Fibrobacter succinogenes subsp. succinogenes S85
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