Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
FSU_1747Identified by match to protein family HMM PF03061; match to protein family HMM TIGR00051. (137 aa)    
Predicted Functional Partners:
FSU_1748
Identified by match to protein family HMM PF00004.
       0.718
fabD
[acyl-carrier-protein] S-malonyltransferase; Identified by similarity to SP:P25715; match to protein family HMM PF00698; match to protein family HMM TIGR00128.
  
 
 0.559
FSU_1749
Hypothetical protein; Identified by glimmer; putative.
       0.529
fabZ
Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ; Identified by similarity to SP:P21774; match to protein family HMM PF07977.
 
  
 0.432
FSU_0361
Putative (3R)-hydroxymyristoyl-(acyl-carrier-protein) dehydratase; Identified by similarity to SP:P21774; match to protein family HMM PF07977.
 
  
 0.408
FSU_0944
Putative acyl-CoA thioester hydrolase; Identified by similarity to SP:P49851; match to protein family HMM PF03061.
  
 
 0.402
Your Current Organism:
Fibrobacter succinogenes
NCBI taxonomy Id: 59374
Other names: F. succinogenes subsp. succinogenes S85, Fibrobacter succinogenes S85, Fibrobacter succinogenes subsp. succinogenes S85
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