Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
FSU_1756Conserved hypothetical protein; Identified by similarity to GB:AAM31899.1. (351 aa)    
Predicted Functional Partners:
FSU_1523
Identified by match to protein family HMM PF05012.
      0.903
FSU_1757
Putative type III restriction-modification system, Res subunit; Possibly an isoschizomer of BfaORFC196P found in Bacteroides fragilis; identified by match to protein family HMM PF04851.
       0.572
FSU_1758
Hypothetical protein; Identified by glimmer; putative.
       0.566
FSU_1759
Conserved hypothetical protein; Identified by similarity to GB:AAO36877.1.
       0.566
FSU_2700
HrgA protein; Identified by similarity to GB:AAO31536.1; match to protein family HMM PF04373.
  
    0.504
hsdS
Type I restriction-modification system, S subunit; Identified by match to protein family HMM PF01420.
  
    0.449
hsdR
Type I restriction-modification system, R subunit; Subunit R is required for both nuclease and ATPase activities, but not for modification.
  
    0.449
FSU_2217
Putative type I restriction-modification system, S subunit; Identified by match to protein family HMM PF01420.
  
    0.449
FSU_3014
Conserved hypothetical protein; Identified by similarity to GB:AAR13137.1.
  
    0.449
FSU_1755
Hypothetical protein; Identified by glimmer; putative.
       0.442
Your Current Organism:
Fibrobacter succinogenes
NCBI taxonomy Id: 59374
Other names: F. succinogenes subsp. succinogenes S85, Fibrobacter succinogenes S85, Fibrobacter succinogenes subsp. succinogenes S85
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