STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
FSU_1774Lipase/acylhydrolase, GDSL family; Identified by match to protein family HMM PF00657. (385 aa)    
Predicted Functional Partners:
FSU_1195
Endo-1,4-beta-xylanase; Identified by similarity to SP:P10478; match to protein family HMM PF00331.
  
 
  0.750
FSU_2898
Putative lipoprotein.
  
     0.693
FSU_2741
Putative xylanase; Identified by match to protein family HMM PF00457; Belongs to the glycosyl hydrolase 11 (cellulase G) family.
  
  
  0.685
xynC
Endo-1,4-beta-xylanase; Cleaves xylans with the production of xylose, xylobiose and xylo-oligosaccharides.
  
  
  0.666
FSU_3006
Putative endo-1,4-beta-xylanase; Identified by similarity to SP:P35811; match to protein family HMM PF00457; Belongs to the glycosyl hydrolase 11 (cellulase G) family.
  
  
  0.658
FSU_2269
Xylanase/xylosidase; Identified by match to protein family HMM PF03422; match to protein family HMM PF04616.
 
     0.648
FSU_2150
Glycosyl hydrolase/glycosyltransferase; Identified by match to protein family HMM PF00150; match to protein family HMM PF00535.
 
 
 0.646
FSU_2468
Esterase domain protein; Identified by similarity to GB:CAC85738.1.
  
     0.646
FSU_2851
Glycosyl hydrolase, family 10; Identified by match to protein family HMM PF00331.
  
 
  0.643
FSU_3135
Pectate lyase family protein/carbohydrate-binding protein, CBM6 family; Identified by match to protein family HMM PF00544; match to protein family HMM PF03422.
  
  
  0.642
Your Current Organism:
Fibrobacter succinogenes
NCBI taxonomy Id: 59374
Other names: F. succinogenes subsp. succinogenes S85, Fibrobacter succinogenes S85, Fibrobacter succinogenes subsp. succinogenes S85
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