STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
FSU_1799Peptidase, M23/M37 family; Identified by match to protein family HMM PF01551. (272 aa)    
Predicted Functional Partners:
FSU_2426
Peptidase, M23/M37 family; Identified by match to protein family HMM PF01551.
 
   
 0.786
FSU_1317
Peptidase, M23/M37 family; Identified by match to protein family HMM PF01551.
  
     0.775
mrcA
Penicillin-binding protein 1A; Identified by similarity to SP:P02918; match to protein family HMM PF00905; match to protein family HMM PF00912; match to protein family HMM TIGR02074.
  
   
 0.675
FSU_1715
Putative penicillin-binding protein; Identified by similarity to GB:AAB52536.1; match to protein family HMM PF00912.
  
   
 0.494
FSU_1913
Conserved hypothetical protein; Identified by similarity to GB:AAO22884.1; match to protein family HMM PF04519.
 
   
 0.468
FSU_0463
M23/M37 peptidase domain protein; Identified by match to protein family HMM PF01551.
  
     0.463
Your Current Organism:
Fibrobacter succinogenes
NCBI taxonomy Id: 59374
Other names: F. succinogenes subsp. succinogenes S85, Fibrobacter succinogenes S85, Fibrobacter succinogenes subsp. succinogenes S85
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