Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
hsdSType I restriction-modification system, S subunit; Identified by match to protein family HMM PF01420. (408 aa)    
Predicted Functional Partners:
hsdM
Type I restriction-modification system, M subunit; Identified by match to protein family HMM PF02384.
 
 
 0.986
hsdR
Type I restriction-modification system, R subunit; Subunit R is required for both nuclease and ATPase activities, but not for modification.
 
  
 0.950
FSU_2218
Putative type I restriction-modification system, M subunit; Identified by match to protein family HMM PF02384.
 
 0.928
FSU_1135
Putative type IIG restriction endonuclease and DNA modification methyltransferase; Possibly an isoschizomer of Hpy99ORF1365P found in Helicobacter pylori; identified by match to protein family HMM PF02384; match to protein family HMM PF07674.
  
 
 0.889
FSU_3014
Conserved hypothetical protein; Identified by similarity to GB:AAR13137.1.
  
  
 0.648
FSU_2700
HrgA protein; Identified by similarity to GB:AAO31536.1; match to protein family HMM PF04373.
  
    0.645
FSU_1814
Conserved domain protein; Identified by similarity to GB:AAO90472.1.
  
    0.581
FSU_1810
Conserved hypothetical protein; Identified by similarity to PIR:S76779.
       0.554
FSU_2217
Putative type I restriction-modification system, S subunit; Identified by match to protein family HMM PF01420.
 
     0.518
FSU_0355
Conserved domain protein; Identified by similarity to GB:AAM39783.1.
  
    0.449
Your Current Organism:
Fibrobacter succinogenes
NCBI taxonomy Id: 59374
Other names: F. succinogenes subsp. succinogenes S85, Fibrobacter succinogenes S85, Fibrobacter succinogenes subsp. succinogenes S85
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