Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
FSU_1828Conserved hypothetical protein; Identified by similarity to GB:BAB79866.1; match to protein family HMM PF08719; match to protein family HMM TIGR02464. (181 aa)    
Predicted Functional Partners:
FSU_0352
Putative lipoprotein.
  
     0.709
FSU_0348
Putative lipoprotein.
  
     0.708
FSU_0351
Putative lipoprotein.
  
     0.702
FSU_1250
Identified by match to protein family HMM PF00004.
    
 
 0.693
FSU_2514
Hypothetical protein; Identified by glimmer; putative.
  
     0.693
FSU_2638
Identified by match to protein family HMM PF00004.
    
 
 0.693
FSU_3090
Identified by match to protein family HMM PF00004; match to protein family HMM PF07728.
    
 
 0.693
FSU_3135
Pectate lyase family protein/carbohydrate-binding protein, CBM6 family; Identified by match to protein family HMM PF00544; match to protein family HMM PF03422.
  
     0.689
ribD
Riboflavin biosynthesis protein RibD; Identified by match to protein family HMM PF00383; match to protein family HMM PF01872; match to protein family HMM TIGR00326.
     
 0.688
FSU_2866
BNR repeat protein; Identified by match to protein family HMM PF02012.
  
     0.667
Your Current Organism:
Fibrobacter succinogenes
NCBI taxonomy Id: 59374
Other names: F. succinogenes subsp. succinogenes S85, Fibrobacter succinogenes S85, Fibrobacter succinogenes subsp. succinogenes S85
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