STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
FSU_1845Conserved hypothetical protein; Identified by similarity to GB:AAQ66006.1; match to protein family HMM TIGR03071. (112 aa)    
Predicted Functional Partners:
FSU_1844
hipA domain protein; Identified by similarity to SP:P23874; match to protein family HMM PF07804; match to protein family HMM PF07805.
 
     0.946
FSU_1846
Identified by match to protein family HMM PF01381.
   
 
 0.829
rfbK
Phosphomannomutase; Identified by similarity to SP:Q00330; match to protein family HMM PF00408; match to protein family HMM PF02878; match to protein family HMM PF02879; match to protein family HMM PF02880.
       0.532
FSU_2277
Putative DNA-binding protein; Identified by match to protein family HMM PF01381.
 
 
 0.523
FSU_2276
Conserved hypothetical protein; Identified by similarity to PIR:B87592; match to protein family HMM PF07804; match to protein family HMM PF07805.
  
     0.499
ksgA
Dimethyladenosine transferase; Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits.
       0.450
FSU_1848
Identified by match to protein family HMM PF00753.
       0.450
FSU_3217
Conserved domain protein; Identified by similarity to GB:AAO77512.1.
  
     0.412
Your Current Organism:
Fibrobacter succinogenes
NCBI taxonomy Id: 59374
Other names: F. succinogenes subsp. succinogenes S85, Fibrobacter succinogenes S85, Fibrobacter succinogenes subsp. succinogenes S85
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.