FSU_1848 protein (Fibrobacter succinogenes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

FSU_1848

Identified by match to protein family HMM PF00753. (277 aa)

Predicted Functional Partners:

ksgA

0.773

folP

0.483

folB

0.483

folK

0.483

FSU_1849

0.480

FSU_1844

0.450

FSU_1845

0.450

FSU_1846

0.450

rfbK

0.416

Your Current Organism:

Fibrobacter succinogenes

NCBI taxonomy Id: 59374
Other names: F. succinogenes subsp. succinogenes S85, Fibrobacter succinogenes S85, Fibrobacter succinogenes subsp. succinogenes S85

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
FSU_1844	FSU_1845	FSU_1844	FSU_1845	hipA domain protein; Identified by similarity to SP:P23874; match to protein family HMM PF07804; match to protein family HMM PF07805.	Conserved hypothetical protein; Identified by similarity to GB:AAQ66006.1; match to protein family HMM TIGR03071.	0.946
FSU_1844	FSU_1846	FSU_1844	FSU_1846	hipA domain protein; Identified by similarity to SP:P23874; match to protein family HMM PF07804; match to protein family HMM PF07805.	Identified by match to protein family HMM PF01381.	0.833
FSU_1844	FSU_1848	FSU_1844	FSU_1848	hipA domain protein; Identified by similarity to SP:P23874; match to protein family HMM PF07804; match to protein family HMM PF07805.	Identified by match to protein family HMM PF00753.	0.450
FSU_1844	ksgA	FSU_1844	FSU_1847	hipA domain protein; Identified by similarity to SP:P23874; match to protein family HMM PF07804; match to protein family HMM PF07805.	Dimethyladenosine transferase; Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits.	0.450
FSU_1844	rfbK	FSU_1844	FSU_1843	hipA domain protein; Identified by similarity to SP:P23874; match to protein family HMM PF07804; match to protein family HMM PF07805.	Phosphomannomutase; Identified by similarity to SP:Q00330; match to protein family HMM PF00408; match to protein family HMM PF02878; match to protein family HMM PF02879; match to protein family HMM PF02880.	0.532
FSU_1845	FSU_1844	FSU_1845	FSU_1844	Conserved hypothetical protein; Identified by similarity to GB:AAQ66006.1; match to protein family HMM TIGR03071.	hipA domain protein; Identified by similarity to SP:P23874; match to protein family HMM PF07804; match to protein family HMM PF07805.	0.946
FSU_1845	FSU_1846	FSU_1845	FSU_1846	Conserved hypothetical protein; Identified by similarity to GB:AAQ66006.1; match to protein family HMM TIGR03071.	Identified by match to protein family HMM PF01381.	0.833
FSU_1845	FSU_1848	FSU_1845	FSU_1848	Conserved hypothetical protein; Identified by similarity to GB:AAQ66006.1; match to protein family HMM TIGR03071.	Identified by match to protein family HMM PF00753.	0.450
FSU_1845	ksgA	FSU_1845	FSU_1847	Conserved hypothetical protein; Identified by similarity to GB:AAQ66006.1; match to protein family HMM TIGR03071.	Dimethyladenosine transferase; Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits.	0.450
FSU_1845	rfbK	FSU_1845	FSU_1843	Conserved hypothetical protein; Identified by similarity to GB:AAQ66006.1; match to protein family HMM TIGR03071.	Phosphomannomutase; Identified by similarity to SP:Q00330; match to protein family HMM PF00408; match to protein family HMM PF02878; match to protein family HMM PF02879; match to protein family HMM PF02880.	0.532
FSU_1846	FSU_1844	FSU_1846	FSU_1844	Identified by match to protein family HMM PF01381.	hipA domain protein; Identified by similarity to SP:P23874; match to protein family HMM PF07804; match to protein family HMM PF07805.	0.833
FSU_1846	FSU_1845	FSU_1846	FSU_1845	Identified by match to protein family HMM PF01381.	Conserved hypothetical protein; Identified by similarity to GB:AAQ66006.1; match to protein family HMM TIGR03071.	0.833
FSU_1846	FSU_1848	FSU_1846	FSU_1848	Identified by match to protein family HMM PF01381.	Identified by match to protein family HMM PF00753.	0.450
FSU_1846	ksgA	FSU_1846	FSU_1847	Identified by match to protein family HMM PF01381.	Dimethyladenosine transferase; Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits.	0.463
FSU_1846	rfbK	FSU_1846	FSU_1843	Identified by match to protein family HMM PF01381.	Phosphomannomutase; Identified by similarity to SP:Q00330; match to protein family HMM PF00408; match to protein family HMM PF02878; match to protein family HMM PF02879; match to protein family HMM PF02880.	0.532
FSU_1848	FSU_1844	FSU_1848	FSU_1844	Identified by match to protein family HMM PF00753.	hipA domain protein; Identified by similarity to SP:P23874; match to protein family HMM PF07804; match to protein family HMM PF07805.	0.450
FSU_1848	FSU_1845	FSU_1848	FSU_1845	Identified by match to protein family HMM PF00753.	Conserved hypothetical protein; Identified by similarity to GB:AAQ66006.1; match to protein family HMM TIGR03071.	0.450
FSU_1848	FSU_1846	FSU_1848	FSU_1846	Identified by match to protein family HMM PF00753.	Identified by match to protein family HMM PF01381.	0.450
FSU_1848	FSU_1849	FSU_1848	FSU_1849	Identified by match to protein family HMM PF00753.	Hypothetical protein; Identified by glimmer; putative.	0.480
FSU_1848	folB	FSU_1848	FSU_0798	Identified by match to protein family HMM PF00753.	Dihydroneopterin aldolase; Catalyzes the conversion of 7,8-dihydroneopterin to 6- hydroxymethyl-7,8-dihydropterin.	0.483