STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
FSU_1909Glycosyltransferase, group 1 family; Identified by match to protein family HMM PF00534. (402 aa)    
Predicted Functional Partners:
FSU_1908
Hypothetical protein; Identified by glimmer; putative.
       0.778
FSU_1215
Mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; Identified by match to protein family HMM PF00483; match to protein family HMM PF01050; match to protein family HMM PF07883; match to protein family HMM TIGR01479; Belongs to the mannose-6-phosphate isomerase type 2 family.
 
 
 0.649
FSU_1907
Conserved domain protein; Identified by similarity to SP:O83823.
    
 0.631
FSU_3223
Identified by similarity to GB:AAD50490.1; match to protein family HMM PF00534; overlaps another CDS with the same product name.
  
     0.601
FSU_3224
Glycosyltransferase, group 1 family; Identified by match to protein family HMM PF00534; overlaps another CDS with the same product name.
  
     0.573
FSU_3310
Putative membrane protein.
  
     0.569
FSU_0718
Putative membrane protein.
 
     0.555
FSU_0791
Putative lipoprotein; Identified by similarity to GB:AAM72991.1.
  
     0.552
FSU_1321
ATP-dependent DNA helicase, RecQ family/UvrD/REP helicase domain protein; Identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF00580; match to protein family HMM TIGR00614.
    
 
 0.540
FSU_1150
Capsular polysaccharide biosynthesis protein; Identified by similarity to GB:AAC69533.1; match to protein family HMM PF01554; match to protein family HMM PF01943.
  
    0.539
Your Current Organism:
Fibrobacter succinogenes
NCBI taxonomy Id: 59374
Other names: F. succinogenes subsp. succinogenes S85, Fibrobacter succinogenes S85, Fibrobacter succinogenes subsp. succinogenes S85
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