Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
FSU_1913Conserved hypothetical protein; Identified by similarity to GB:AAO22884.1; match to protein family HMM PF04519. (125 aa)    
Predicted Functional Partners:
FSU_1914
Peptidase, M23/M37 family; Identified by match to protein family HMM PF01551.
 
   
 0.790
FSU_1915
ParB-like protein; Identified by similarity to SP:P26497; match to protein family HMM PF02195; match to protein family HMM TIGR00180; Belongs to the ParB family.
       0.702
FSU_1916
ATPase, ParA family; Identified by similarity to SP:P37522; match to protein family HMM PF01656.
     
 0.502
FSU_1799
Peptidase, M23/M37 family; Identified by match to protein family HMM PF01551.
 
   
 0.477
FSU_3077
Identified by match to protein family HMM PF00691; match to protein family HMM PF02412.
  
     0.466
FSU_0151
Identified by match to protein family HMM PF00691.
  
     0.454
cpdA
Putative 3',5'-cyclic-nucleotide phosphodiesterase; Hydrolyzes cAMP to 5'-AMP. Plays an important regulatory role in modulating the intracellular concentration of cAMP, thereby influencing cAMP-dependent processes.
       0.401
FSU_0040
Peptidase, M23/M37 family; Identified by match to protein family HMM PF01551.
 
   
 0.400
Your Current Organism:
Fibrobacter succinogenes
NCBI taxonomy Id: 59374
Other names: F. succinogenes subsp. succinogenes S85, Fibrobacter succinogenes S85, Fibrobacter succinogenes subsp. succinogenes S85
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