Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
FSU_1915ParB-like protein; Identified by similarity to SP:P26497; match to protein family HMM PF02195; match to protein family HMM TIGR00180; Belongs to the ParB family. (332 aa)    
Predicted Functional Partners:
FSU_1916
ATPase, ParA family; Identified by similarity to SP:P37522; match to protein family HMM PF01656.
 
 0.997
FSU_1914
Peptidase, M23/M37 family; Identified by match to protein family HMM PF01551.
       0.785
FSU_2996
FtsK/SpoIIIE family protein; Identified by similarity to SP:P46889; match to protein family HMM PF01580; match to protein family HMM PF09397; Belongs to the FtsK/SpoIIIE/SftA family.
  
   
 0.725
FSU_1913
Conserved hypothetical protein; Identified by similarity to GB:AAO22884.1; match to protein family HMM PF04519.
       0.702
FSU_2333
FtsK/SpoIIIE family protein; Identified by similarity to SP:P46889; match to protein family HMM PF01580; Belongs to the FtsK/SpoIIIE/SftA family.
  
   
 0.698
rsmG
Methyltransferase GidB; Specifically methylates the N7 position of a guanine in 16S rRNA; Belongs to the methyltransferase superfamily. RNA methyltransferase RsmG family.
  
  
 0.583
dnaA_2
Chromosomal replication initiator protein DnaA; Plays an important role in the initiation and regulation of chromosomal replication. Binds to the origin of replication; it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box): 5'- TTATC[CA]A[CA]A-3'. DnaA binds to ATP and to acidic phospholipids. Belongs to the DnaA family.
 
  
 0.437
dnaA_1
Chromosomal replication initiator protein DnaA; Plays an important role in the initiation and regulation of chromosomal replication. Binds to the origin of replication; it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box): 5'- TTATC[CA]A[CA]A-3'. DnaA binds to ATP and to acidic phospholipids.
 
  
 0.427
Your Current Organism:
Fibrobacter succinogenes
NCBI taxonomy Id: 59374
Other names: F. succinogenes subsp. succinogenes S85, Fibrobacter succinogenes S85, Fibrobacter succinogenes subsp. succinogenes S85
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