STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
FSU_1937Conserved hypothetical protein; Identified by similarity to SP:P43933. (106 aa)    
Predicted Functional Partners:
FSU_1938
Receptor family ligand binding region protein.
       0.730
tmk
dTMP kinase; Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis; Belongs to the thymidylate kinase family.
       0.631
FSU_1936
Identified by match to protein family HMM PF00149.
       0.631
FSU_0205
Conserved domain protein; Identified by similarity to GB:AAN49025.1.
  
     0.506
FSU_0816
Putative membrane protein; Identified by match to protein family HMM PF08305.
  
     0.494
FSU_0582
Putative inorganic pyrophosphatase, manganese-dependent; Identified by similarity to SP:P37487; match to protein family HMM PF01368.
     
  0.483
FSU_0286
Fimbriae-associated domain protein; Identified by similarity to GP:3929312.
  
     0.472
atpD
V-type ATPase, D subunit; Identified by match to protein family HMM PF01813; match to protein family HMM TIGR00309.
     
  0.462
atpI
V-type ATPase, I subunit; Identified by match to protein family HMM PF01496.
     
  0.462
atpA
V-type ATPase, A subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane. The V-type alpha chain is a catalytic subunit. Belongs to the ATPase alpha/beta chains family.
     
  0.460
Your Current Organism:
Fibrobacter succinogenes
NCBI taxonomy Id: 59374
Other names: F. succinogenes subsp. succinogenes S85, Fibrobacter succinogenes S85, Fibrobacter succinogenes subsp. succinogenes S85
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.