Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
FSU_1938Receptor family ligand binding region protein. (613 aa)    
Predicted Functional Partners:
FSU_1937
Conserved hypothetical protein; Identified by similarity to SP:P43933.
       0.730
FSU_2120
FG-GAP repeat protein; Identified by match to protein family HMM PF01839.
  
     0.631
tmk
dTMP kinase; Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis; Belongs to the thymidylate kinase family.
       0.618
FSU_1310
Hypothetical protein; Identified by glimmer; putative.
  
     0.605
FSU_1936
Identified by match to protein family HMM PF00149.
       0.588
FSU_2654
Outer membrane protein, OMP85 family; Identified by match to protein family HMM PF01103; match to protein family HMM PF07244; match to protein family HMM TIGR03303.
  
   
 0.566
FSU_2254
Two component regulator propeller family protein.
  
     0.563
FSU_2403
Identified by match to protein family HMM TIGR01352.
  
     0.550
FSU_3164
Transcriptional regulator, LuxR family; Identified by match to protein family HMM PF00196; match to protein family HMM PF07719; match to protein family HMM PF08281.
    
 0.536
FSU_3056
Outer membrane protein, OMP85 family; Identified by match to protein family HMM PF01103; match to protein family HMM PF07244.
  
   
 0.534
Your Current Organism:
Fibrobacter succinogenes
NCBI taxonomy Id: 59374
Other names: F. succinogenes subsp. succinogenes S85, Fibrobacter succinogenes S85, Fibrobacter succinogenes subsp. succinogenes S85
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