STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
FSU_1944Putative periplasmic binding protein; Identified by match to protein family HMM PF01497. (433 aa)    
Predicted Functional Partners:
FSU_0601
Iron compound ABC transporter, ATP-binding protein; Identified by similarity to SP:P15031; match to protein family HMM PF00005.
 
 0.986
FSU_0602
Iron compound ABC transporter, permease protein; Identified by match to protein family HMM PF01032; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
 0.980
FSU_1945
Cyclic nucleotide-binding domain protein; Identified by match to protein family HMM PF00027.
     
 0.781
FSU_1479
Conserved hypothetical protein; Identified by similarity to GB:AAO79205.1; match to protein family HMM PF08885.
  
     0.693
purM
Phosphoribosylformylglycinamidine cyclo-ligase; Identified by similarity to SP:P12043; match to protein family HMM PF00586; match to protein family HMM PF02769; match to protein family HMM TIGR00878.
       0.650
FSU_0828
Conserved domain protein; Identified by match to protein family HMM PF03993.
 
     0.631
FSU_1943
Hypothetical protein; Identified by glimmer; putative.
       0.546
FSU_1905
Conserved hypothetical protein; Identified by similarity to GB:AAM71309.1.
  
     0.511
FSU_1947
Putative endoglucanase; Identified by match to protein family HMM PF02015.
       0.498
FSU_2056
Outer membrane efflux protein; Identified by match to protein family HMM PF02321.
  
     0.453
Your Current Organism:
Fibrobacter succinogenes
NCBI taxonomy Id: 59374
Other names: F. succinogenes subsp. succinogenes S85, Fibrobacter succinogenes S85, Fibrobacter succinogenes subsp. succinogenes S85
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