FSU_1978 protein (Fibrobacter succinogenes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

FSU_1978

PAP2 domain protein; Identified by match to protein family HMM PF01569. (181 aa)

Predicted Functional Partners:

FSU_1979

0.775

FSU_0051

0.637

FSU_0592

0.630

rplF

0.630

atpI

0.604

FSU_2997

0.590

ackA

0.550

FSU_2799

0.546

FSU_2872

0.524

FSU_1427

0.499

Your Current Organism:

Fibrobacter succinogenes

NCBI taxonomy Id: 59374
Other names: F. succinogenes subsp. succinogenes S85, Fibrobacter succinogenes S85, Fibrobacter succinogenes subsp. succinogenes S85

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
FSU_0051	FSU_0592	FSU_0051	FSU_0592	acyltransferase/AMP-binding enzyme; Identified by match to protein family HMM PF00501; match to protein family HMM PF01553; match to protein family HMM PF07690.	acyltransferase/AMP-binding enzyme; Identified by match to protein family HMM PF00501; match to protein family HMM PF01553; match to protein family HMM PF07690.	0.685
FSU_0051	FSU_1427	FSU_0051	FSU_1427	acyltransferase/AMP-binding enzyme; Identified by match to protein family HMM PF00501; match to protein family HMM PF01553; match to protein family HMM PF07690.	Glycerophosphoryl diester phosphodiesterase family protein; Identified by match to protein family HMM PF03009.	0.414
FSU_0051	FSU_1978	FSU_0051	FSU_1978	acyltransferase/AMP-binding enzyme; Identified by match to protein family HMM PF00501; match to protein family HMM PF01553; match to protein family HMM PF07690.	PAP2 domain protein; Identified by match to protein family HMM PF01569.	0.637
FSU_0051	FSU_2872	FSU_0051	FSU_2872	acyltransferase/AMP-binding enzyme; Identified by match to protein family HMM PF00501; match to protein family HMM PF01553; match to protein family HMM PF07690.	Putative CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase; Identified by match to protein family HMM PF01066; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.	0.618
FSU_0051	FSU_2997	FSU_0051	FSU_2997	acyltransferase/AMP-binding enzyme; Identified by match to protein family HMM PF00501; match to protein family HMM PF01553; match to protein family HMM PF07690.	Non-ribosomal peptide synthetase; Identified by similarity to SP:P27206; match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM PF00668.	0.464
FSU_0051	rplF	FSU_0051	FSU_1875	acyltransferase/AMP-binding enzyme; Identified by match to protein family HMM PF00501; match to protein family HMM PF01553; match to protein family HMM PF07690.	Ribosomal protein L6; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family.	0.863
FSU_0592	FSU_0051	FSU_0592	FSU_0051	acyltransferase/AMP-binding enzyme; Identified by match to protein family HMM PF00501; match to protein family HMM PF01553; match to protein family HMM PF07690.	acyltransferase/AMP-binding enzyme; Identified by match to protein family HMM PF00501; match to protein family HMM PF01553; match to protein family HMM PF07690.	0.685
FSU_0592	FSU_1978	FSU_0592	FSU_1978	acyltransferase/AMP-binding enzyme; Identified by match to protein family HMM PF00501; match to protein family HMM PF01553; match to protein family HMM PF07690.	PAP2 domain protein; Identified by match to protein family HMM PF01569.	0.630
FSU_0592	FSU_2872	FSU_0592	FSU_2872	acyltransferase/AMP-binding enzyme; Identified by match to protein family HMM PF00501; match to protein family HMM PF01553; match to protein family HMM PF07690.	Putative CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase; Identified by match to protein family HMM PF01066; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.	0.610
FSU_0592	FSU_2997	FSU_0592	FSU_2997	acyltransferase/AMP-binding enzyme; Identified by match to protein family HMM PF00501; match to protein family HMM PF01553; match to protein family HMM PF07690.	Non-ribosomal peptide synthetase; Identified by similarity to SP:P27206; match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM PF00668.	0.463
FSU_0592	rplF	FSU_0592	FSU_1875	acyltransferase/AMP-binding enzyme; Identified by match to protein family HMM PF00501; match to protein family HMM PF01553; match to protein family HMM PF07690.	Ribosomal protein L6; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family.	0.862
FSU_1427	FSU_0051	FSU_1427	FSU_0051	Glycerophosphoryl diester phosphodiesterase family protein; Identified by match to protein family HMM PF03009.	acyltransferase/AMP-binding enzyme; Identified by match to protein family HMM PF00501; match to protein family HMM PF01553; match to protein family HMM PF07690.	0.414
FSU_1427	FSU_1978	FSU_1427	FSU_1978	Glycerophosphoryl diester phosphodiesterase family protein; Identified by match to protein family HMM PF03009.	PAP2 domain protein; Identified by match to protein family HMM PF01569.	0.499
FSU_1427	FSU_2872	FSU_1427	FSU_2872	Glycerophosphoryl diester phosphodiesterase family protein; Identified by match to protein family HMM PF03009.	Putative CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase; Identified by match to protein family HMM PF01066; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.	0.627
FSU_1978	FSU_0051	FSU_1978	FSU_0051	PAP2 domain protein; Identified by match to protein family HMM PF01569.	acyltransferase/AMP-binding enzyme; Identified by match to protein family HMM PF00501; match to protein family HMM PF01553; match to protein family HMM PF07690.	0.637
FSU_1978	FSU_0592	FSU_1978	FSU_0592	PAP2 domain protein; Identified by match to protein family HMM PF01569.	acyltransferase/AMP-binding enzyme; Identified by match to protein family HMM PF00501; match to protein family HMM PF01553; match to protein family HMM PF07690.	0.630
FSU_1978	FSU_1427	FSU_1978	FSU_1427	PAP2 domain protein; Identified by match to protein family HMM PF01569.	Glycerophosphoryl diester phosphodiesterase family protein; Identified by match to protein family HMM PF03009.	0.499
FSU_1978	FSU_1979	FSU_1978	FSU_1979	PAP2 domain protein; Identified by match to protein family HMM PF01569.	Conserved domain protein; Identified by similarity to GB:BAC97697.1; match to protein family HMM PF00300.	0.775
FSU_1978	FSU_2799	FSU_1978	FSU_2799	PAP2 domain protein; Identified by match to protein family HMM PF01569.	Bacterial sugar transferase; Identified by match to protein family HMM PF02397; match to protein family HMM TIGR03025.	0.546
FSU_1978	FSU_2872	FSU_1978	FSU_2872	PAP2 domain protein; Identified by match to protein family HMM PF01569.	Putative CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase; Identified by match to protein family HMM PF01066; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.	0.524