STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
FSU_1998Putative membrane protein; Identified by similarity to GB:AAP05710.1. (611 aa)    
Predicted Functional Partners:
FSU_0504
PDZ/thioredoxin domain protein; Identified by match to protein family HMM PF00085; match to protein family HMM PF00578; match to protein family HMM PF08534.
  
 
 0.839
FSU_0167
Identified by similarity to SP:P35160; similarity to SP:P45523; match to protein family HMM PF00578; match to protein family HMM PF08534.
  
 
 0.805
FSU_1506
Identified by match to protein family HMM PF00578; match to protein family HMM PF08534.
  
 
 0.805
FSU_0383
Putative outer membrane protein; Identified by similarity to PIR:A49232; match to protein family HMM PF01323.
 
 
 0.715
FSU_1999
RNA polymerase sigma-70 factor family protein; Identified by match to protein family HMM PF04542; match to protein family HMM PF08281; match to protein family HMM TIGR02937; Belongs to the sigma-70 factor family. ECF subfamily.
       0.555
FSU_1000
Thiol-disulfide oxidoreductase-like protein; Identified by similarity to SP:P35160; match to protein family HMM PF08534.
  
 
 0.553
FSU_2000
Antigen-like protein; Identified by similarity to GB:AAQ66633.1.
       0.490
FSU_2001
Putative lipoprotein.
       0.490
FSU_2002
Identified by match to protein family HMM PF01743; Belongs to the tRNA nucleotidyltransferase/poly(A) polymerase family.
       0.418
Your Current Organism:
Fibrobacter succinogenes
NCBI taxonomy Id: 59374
Other names: F. succinogenes subsp. succinogenes S85, Fibrobacter succinogenes S85, Fibrobacter succinogenes subsp. succinogenes S85
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