STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
FSU_2003Glycosyltransferase, group 2 family; Identified by match to protein family HMM PF00535. (367 aa)    
Predicted Functional Partners:
FSU_0402
Conserved domain protein; Identified by similarity to PIR:T07884.
  
   
 0.566
FSU_0101
Putative lipoprotein.
  
     0.564
FSU_0444
Prenyltransferase, UbiA family; Identified by match to protein family HMM PF01040.
 
     0.558
lpxA
acyl-[acyl-carrier-protein]--UDP-N- acetylglucosamine O-acyltransferase; Identified by similarity to SP:P10440; match to protein family HMM PF00132; match to protein family HMM TIGR01852.
     
 0.519
FSU_2125
Putative lipoprotein.
  
     0.493
FSU_3310
Putative membrane protein.
 
     0.492
FSU_2496
Identified by match to protein family HMM PF01522.
 
  
 0.477
FSU_3247
Putative capsular polysaccharide biosynthesis glycosyltransferase; Identified by similarity to GB:BAA82284.1; match to protein family HMM PF00535.
  
     0.461
FSU_2576
Glycosyltransferase, group 2 family; Identified by match to protein family HMM PF00535.
  
     0.453
FSU_0497
Glycosyltransferase; Identified by similarity to GB:AAC44786.1; match to protein family HMM PF00535.
  
     0.443
Your Current Organism:
Fibrobacter succinogenes
NCBI taxonomy Id: 59374
Other names: F. succinogenes subsp. succinogenes S85, Fibrobacter succinogenes S85, Fibrobacter succinogenes subsp. succinogenes S85
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.