STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
FSU_2007Cellulose-binding domain protein; Identified by similarity to GB:BAA10965.1. (257 aa)    
Predicted Functional Partners:
FSU_2008
Hypothetical protein; Identified by glimmer; putative.
       0.768
FSU_2009
Hypothetical protein; Identified by glimmer; putative.
       0.726
FSU_2010
Hypothetical protein; Identified by glimmer; putative.
       0.689
FSU_2011
Putative lipoprotein.
       0.660
FSU_2012
Putative chitinase; Identified by match to protein family HMM PF00704.
       0.629
ribD
Riboflavin biosynthesis protein RibD; Identified by match to protein family HMM PF00383; match to protein family HMM PF01872; match to protein family HMM TIGR00326.
   
    0.505
FSU_2502
Fibro-slime domain protein; Identified by match to protein family HMM TIGR02148.
      
 0.498
FSU_3052
Fibro-slime domain protein; Identified by similarity to PIR:C95146; similarity to GB:BAB47241.1; match to protein family HMM TIGR02148.
      
 0.498
FSU_2013
Cellulase; Identified by similarity to GB:AAC41523.1; match to protein family HMM PF00759; match to protein family HMM PF02927.
  
 
  0.435
FSU_2005
Cellulase; Identified by similarity to GB:AAD39739.1; match to protein family HMM PF00150; Belongs to the glycosyl hydrolase 5 (cellulase A) family.
       0.407
Your Current Organism:
Fibrobacter succinogenes
NCBI taxonomy Id: 59374
Other names: F. succinogenes subsp. succinogenes S85, Fibrobacter succinogenes S85, Fibrobacter succinogenes subsp. succinogenes S85
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.