STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
FSU_2029Conserved hypothetical protein; Identified by similarity to GB:AAO58193.1. (333 aa)    
Predicted Functional Partners:
FSU_2028
Von Willebrand factor type A domain protein; Identified by match to protein family HMM PF00092.
 
    0.956
FSU_2027
Conserved domain protein; Identified by similarity to GB:AAO58191.1.
 
   
 0.913
FSU_2732
Von Willebrand factor type A domain protein; Identified by similarity to GB:AAR07664.1; match to protein family HMM PF00092.
 
    0.811
FSU_0537
Conserved domain protein; Identified by similarity to PIR:AC0074; match to protein family HMM PF00092.
 
    0.793
FSU_2730
Protein kinase domain protein.
 
 
 0.786
fmt
methionyl-tRNA formyltransferase; Attaches a formyl group to the free amino group of methionyl- tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus; Belongs to the Fmt family.
  
   0.765
FSU_0538
Conserved hypothetical protein; Identified by similarity to GB:BAC08528.1.
 
   
 0.644
FSU_2026
Hypothetical protein; Identified by glimmer; putative.
       0.610
FSU_2727
Conserved domain protein; Identified by similarity to GB:AAP24919.1.
 
    0.542
FSU_2046
Hypothetical protein; Identified by glimmer; putative.
  
 
 
 0.540
Your Current Organism:
Fibrobacter succinogenes
NCBI taxonomy Id: 59374
Other names: F. succinogenes subsp. succinogenes S85, Fibrobacter succinogenes S85, Fibrobacter succinogenes subsp. succinogenes S85
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.