STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
FSU_2030Radical SAM domain protein; Identified by match to protein family HMM PF04055. (332 aa)    
Predicted Functional Partners:
FSU_0931
Putative aspartoacylase; Identified by similarity to SP:P46446; match to protein family HMM PF04952.
  
     0.669
ribA
Riboflavin biosynthesis protein RibA; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family.
  
 
  0.555
FSU_2995
Adenylate/guanylate cyclase domain protein; Identified by match to protein family HMM PF00211; match to protein family HMM PF05226.
   
 
  0.545
FSU_1266
Conserved domain protein; Identified by similarity to GB:AAP26486.1.
  
     0.460
FSU_2027
Conserved domain protein; Identified by similarity to GB:AAO58191.1.
 
     0.424
FSU_2028
Von Willebrand factor type A domain protein; Identified by match to protein family HMM PF00092.
       0.416
FSU_2029
Conserved hypothetical protein; Identified by similarity to GB:AAO58193.1.
       0.416
FSU_2032
Hypothetical protein; Identified by glimmer; putative.
       0.405
Your Current Organism:
Fibrobacter succinogenes
NCBI taxonomy Id: 59374
Other names: F. succinogenes subsp. succinogenes S85, Fibrobacter succinogenes S85, Fibrobacter succinogenes subsp. succinogenes S85
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