STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
FSU_2064Thioredoxin family protein. (158 aa)    
Predicted Functional Partners:
clpP_2
ATP-dependent Clp protease, proteolytic subunit ClpP; Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins. Belongs to the peptidase S14 family.
   
   0.783
FSU_2065
Glycosyltransferase, group 2 family; Identified by match to protein family HMM PF00535.
       0.777
ftsY
Signal recognition particle-docking protein FtsY; Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Acts as a receptor for the complex formed by the signal recognition particle (SRP) and the ribosome-nascent chain (RNC).
       0.773
FSU_2063
Hypothetical protein; Identified by glimmer; putative.
       0.773
FSU_2066
Hypothetical protein; Identified by glimmer; putative.
       0.620
FSU_0181
Putative tyrosine-protein kinase; Identified by similarity to SP:P38134; match to protein family HMM PF02706; match to protein family HMM TIGR01007.
    
  0.535
FSU_2077
Putative tyrosine-protein kinase; Identified by similarity to SP:P38134; match to protein family HMM PF02706; match to protein family HMM TIGR01007.
    
  0.535
FSU_2799
Bacterial sugar transferase; Identified by match to protein family HMM PF02397; match to protein family HMM TIGR03025.
    
  0.519
FSU_2060
Putative 3-dehydroquinate dehydratase; Identified by similarity to SP:P35146; match to protein family HMM PF01487.
       0.503
FSU_0162
Putative cellobiose/cellodextrin phosphorylase; Identified by similarity to GB:AAB95491.2; similarity to GB:AAC45511.1.
     
 0.488
Your Current Organism:
Fibrobacter succinogenes
NCBI taxonomy Id: 59374
Other names: F. succinogenes subsp. succinogenes S85, Fibrobacter succinogenes S85, Fibrobacter succinogenes subsp. succinogenes S85
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