STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
FSU_2086Sodium ion-translocating decarboxylase, beta subunit; Identified by match to protein family HMM PF03977; match to protein family HMM TIGR01109. (386 aa)    
Predicted Functional Partners:
FSU_2085
Biotin/lipoic acid binding domain protein; Identified by match to protein family HMM PF00364.
 
  
 0.928
FSU_1289
Putative pyruvate carboxylase, B subunit; Identified by similarity to SP:Q58628; match to protein family HMM PF00682.
 
 
 0.910
nifJ
Pyruvate synthase; Identified by similarity to SP:P52647; match to protein family HMM PF00037; match to protein family HMM PF01558; match to protein family HMM PF01855; match to protein family HMM TIGR02176.
    
 0.703
maeB
NADP-dependent malic enzyme; Identified by similarity to SP:P76558; match to protein family HMM PF00390; match to protein family HMM PF01515; match to protein family HMM PF03949.
    
 0.693
fumB
Fumarate hydratase, class I, anaerobic; Catalyzes the reversible hydration of fumarate to (S)-malate. Belongs to the class-I fumarase family.
    
  0.619
FSU_3237
Conserved hypothetical protein; Identified by similarity to GB:AAO36720.1.
  
 
 0.618
FSU_2084
Hypothetical protein; Identified by glimmer; putative.
       0.595
FSU_2171
Conserved hypothetical protein; Identified by similarity to GB:AAO35065.1.
    
 0.557
FSU_0058
Carboxyl transferase domain protein; Identified by match to protein family HMM PF01039.
  
 
 0.553
FSU_2651
Conserved domain protein; Identified by similarity to GB:AAQ66639.1; match to protein family HMM PF08757.
  
 
  0.528
Your Current Organism:
Fibrobacter succinogenes
NCBI taxonomy Id: 59374
Other names: F. succinogenes subsp. succinogenes S85, Fibrobacter succinogenes S85, Fibrobacter succinogenes subsp. succinogenes S85
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