Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
FSU_2088Hypothetical protein; Identified by glimmer; putative. (287 aa)    
Predicted Functional Partners:
FSU_2089
Putative lipoprotein; Identified by match to protein family HMM PF09603; match to protein family HMM TIGR02145.
       0.768
FSU_2090
Hypothetical protein; Identified by glimmer; putative.
      
0.460
FSU_2091
Putative lipoprotein; Identified by match to protein family HMM TIGR02145.
       0.460
FSU_2092
Putative lipoprotein; Identified by match to protein family HMM TIGR02145.
       0.446
FSU_2086
Sodium ion-translocating decarboxylase, beta subunit; Identified by match to protein family HMM PF03977; match to protein family HMM TIGR01109.
       0.440
FSU_2093
Putative lipoprotein; Identified by match to protein family HMM PF09603; match to protein family HMM TIGR02145.
       0.433
FSU_2085
Biotin/lipoic acid binding domain protein; Identified by match to protein family HMM PF00364.
       0.423
Your Current Organism:
Fibrobacter succinogenes
NCBI taxonomy Id: 59374
Other names: F. succinogenes subsp. succinogenes S85, Fibrobacter succinogenes S85, Fibrobacter succinogenes subsp. succinogenes S85
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