STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
FSU_2097Conserved domain protein; Identified by similarity to GB:AAQ61136.1; match to protein family HMM PF09603; match to protein family HMM TIGR02145. (813 aa)    
Predicted Functional Partners:
FSU_2096
Putative lipoprotein; Identified by match to protein family HMM PF09603; match to protein family HMM TIGR02145.
 
    
0.720
FSU_1310
Hypothetical protein; Identified by glimmer; putative.
  
 
   0.716
FSU_2095
Hypothetical protein; Identified by glimmer; putative.
       0.670
FSU_0622
Putative membrane protein; Identified by match to protein family HMM PF08305.
  
     0.663
FSU_0522
Tetratricopeptide repeat protein; Identified by match to protein family HMM PF00515; match to protein family HMM PF07719.
 
 
   0.659
FSU_2254
Two component regulator propeller family protein.
  
     0.655
FSU_1150
Capsular polysaccharide biosynthesis protein; Identified by similarity to GB:AAC69533.1; match to protein family HMM PF01554; match to protein family HMM PF01943.
  
     0.651
FSU_0382
Cellulase; Identified by similarity to GB:AAC45377.1; match to protein family HMM PF03425.
  
  
  0.632
FSU_2094
Identified by match to protein family HMM PF01637.
 
     0.586
FSU_0934
Putative transporter; Identified by similarity to GB:AAN68395.1.
  
     0.584
Your Current Organism:
Fibrobacter succinogenes
NCBI taxonomy Id: 59374
Other names: F. succinogenes subsp. succinogenes S85, Fibrobacter succinogenes S85, Fibrobacter succinogenes subsp. succinogenes S85
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